PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00659
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 807aa    MW: 89410.7 Da    PI: 7.5482
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00659genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.1e-15293374179
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                 f+k+l+ sd+++ grlvlpk +ae++   +++ e++ l+++d +g++W++++++  +++s++yvl+ G     ++  L++gD+
  AA32G00659 293 FEKTLSASDAGRIGRLVLPKACAEAYfpPINQSEGIPLKIQDVKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMMLQAGDT 374
                 99**************************777788999***************9989999999***9.***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0135903491IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF1019361.44E-15290374IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-23290375IPR015300DNA-binding pseudobarrel domain
CDDcd100174.90E-19291374No hitNo description
PROSITE profilePS508639.291293400IPR003340B3 DNA binding domain
SMARTSM010196.1E-12293399IPR003340B3 DNA binding domain
PfamPF023625.7E-12293374IPR003340B3 DNA binding domain
PROSITE profilePS5105013.35551601IPR011124Zinc finger, CW-type
PfamPF074961.6E-8556598IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MGSKMCMNAL CASTSTFEWK KGWPLRSGVL ADLCHRCGSA YENSLFCDTF HVDQSGWREC  60
CLCSKRLHCG CIASKYLVEL LDFGGISCTT CANCHQLNVT KRSENQDVFG RMPMKTLADR  120
QHINGESGMI GNSIDGGRNE ADRFSQTLLS GDKREEFISH HGFGKLLKSE NVRYRLETGE  180
IQESPSQPSL NMALAVIPYS SSFSTGVSEG KKHITASNSH ILQCSTSVLP KPSKSVLASP  240
SATSKSAQTR IGRPPVEGRG KGHLLPRYWP KYTDKELQQI SGNSLNLNIT PLFEKTLSAS  300
DAGRIGRLVL PKACAEAYFP PINQSEGIPL KIQDVKGKEW TFQFRFWPNN NSRMYVLEGV  360
TPCIQSMMLQ AGDTGIAQYP INSFRVDPGG KLVMGSRKAA NAGDQQGCAL TNGTSAEDTS  420
SSGVTETPSS INASSYPSQI PKELKGLPES SPDGGNSLKK SENNGSRICD DSPPRAKDKK  480
RTRTIGTKNK RLHLHSEEAM ELRLTWEEAQ DLLRPSPTAK STFSTIEDYE IEEFDEPPVF  540
GKKAIITSTP SGGQEQWAPC DDCSKWRRLP VEAFLPLRWT CSDNVWDEDR CSCSSPEESL  600
KELENVLKVG REYKRRRIGE RETATREQNV SGLDALASAA VLGDALGENN VEPEVATTTR  660
HPRHRAGCSC IVCIQPPSGK GRHKPNCSCN VCNTVKRRFK TLMMRRRKKQ LEREGPAEEK  720
EEVQKAESDN INKNKPEKED NTGRIDLNSD PYNREDMETV VMDKDESRKR EAEQCLVREE  780
GVVQGSDVGV VTELKEDGVK ICEEPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1613617KRRRI
2695708KRRFKTLMMRRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410148.10.0hypothetical protein EUTSA_v10016263mg
SwissprotQ8W4L50.0VAL1_ARATH; B3 domain-containing transcription repressor VAL1
TrEMBLV4NXH20.0V4NXH2_EUTSA; Uncharacterized protein
STRINGscaffold_401535.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69232440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2